PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG269800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26811.4 Da    PI: 9.4772
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG269800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.3e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         kri+n + rqvtfskRr g++KKA+EL +LCdaev +i+fsstg+ly+++s
  Pavir.6KG269800.1.p  9 KRIDNATSRQVTFSKRRSGLFKKAKELAILCDAEVGLIVFSSTGRLYDFAS 59
                         79***********************************************86 PP

2K-box77.14.5e-2678169697
                K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          ++  ++a+a+ +q+e+  L+++++nLq+ +R+llG++L  L++k+Lq+Le++Le sl++iR kK++l+++qi+el +k + +++en +L 
  Pavir.6KG269800.1.p  78 QTMSASAEAKLWQREAGSLRQQLHNLQEHHRQLLGQKLCGLDVKDLQNLENKLEMSLRNIRMKKDQLMIDQIQELNRKGRLMHQENIELC 167
                          3346788899****************************************************************************9998 PP

                K-box  96 kk 97 
                          +k
  Pavir.6KG269800.1.p 168 NK 169
                          77 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.674161IPR002100Transcription factor, MADS-box
CDDcd002653.00E-45278No hitNo description
SuperFamilySSF554551.19E-32291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2583169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.50986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KAKELAILCD AEVGLIVFSS TGRLYDFAST  60
SMKSVIERYS EAKDDHHQTM SASAEAKLWQ REAGSLRQQL HNLQEHHRQL LGQKLCGLDV  120
KDLQNLENKL EMSLRNIRMK KDQLMIDQIQ ELNRKGRLMH QENIELCNKA NLVHQENIEL  180
RRKVYGHGVN EHPASSTVRN GILNTENEED VLVNLELSQP RSVQRDKSET PSTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S3e-22176176Myocyte-specific enhancer factor 2B
1tqe_R3e-22176176Myocyte-specific enhancer factor 2B
1tqe_Q3e-22176176Myocyte-specific enhancer factor 2B
1tqe_P3e-22176176Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973502.11e-153PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP497e-94MAD27_ORYSJ; MADS-box transcription factor 27
SwissprotQ6VAM48e-95MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLA0A0E0ELT71e-119A0A0E0ELT7_9ORYZ; Uncharacterized protein
STRINGOB08G23110.11e-115(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-90AGAMOUS-like 16